Abstracts - English

Theoretical Biophysics. Curent Topics.

Abstracts in English Abstracts in Russian Program Photos

Afonnikov D., Wingender E.	Positional correlation of physico-chemical characteristics within the alpha-helices of C₂H₂-type zinc-finger DNA-binding domains: analysis of phage display data
Aksyonov S.I.	On nature of efficency of the weak low frequency EMF in biological systems
Alenin V.V., Guetsova M.L., Samsonova M.G., Serov V.N., Yudenitch L.S.	The SSE database (stress signalling in eukaryotes)
Ali F. M.	A new metabolic biomagnetic resonance model to describe the interaction of ELF MF with biological systems
Ananko E.A., Kel A.E., Kel O.V., Ignatieva E.V., Podkolodnaya O.A., Merkulova T.I., Merkulov I.L., Stepanenko V.M., Busygina T.V., Kozlova O.N., Kochetov A.V., Kolpakov F.A., Kolesov G.B., Lavryushev S.V., Grigorovich D.A., Podkolodny N.L., Frolov A.S., Romashchenko A.G., Kolchanov N.A.	Transcription regulatory regions database (TRRD) as a global information system on transcription regulation of eukaryotic genes
Ananko E.A., Kolpakov F.A., Kolesov G.B., Kolchanov N.A.	Automatic generation of gene networks schemes from formalized description in the GeneNet database
Andreev A.I., Turovetsky V.B., Rubin A.B.	Effects of middle-wave ultraviolet irradiation on immunocompetent cells
Babenko V.N., Kosarev P.S., Basin V.G.	Searching for the repeats in regulatory regions of eukaryotic genes
Berezovsky I.N., Esipova N.G., Namiot V.A., TumanyanV.G.	Protein domain definition based on the energy distribution in the spatial structure
Blinov V.M., Resenchuk S.M., Uvarov D.L., Chirikova G.B., Denisov S.I., Kisselev L.L.	Invariant secondary structure of left and right monomers of Alu repeats in human genome
Borovina T., Nazipova N., Kislyuk O.	Investigation of non-complete direct DNA repeats by the use of redundancy profiles
Buffat L., Vincens P., Hazout S.	Tools for extracting and displaying the DNA duplicates in a complete genome
Collar A. F.	Qualitative analysis of a cooperative-competitive model of excitation-inhibition of the cerebral activity
Demchenko A.	Protein folding with molecular chaperones
Demin O.V.	Understanding regulatory properties of complex biological systems can be improved through the application of mathematical modeling approach
Dubchak I., Muchnik I.	Protein fold predictor based on global descriptors of amino acid sequence
Eisenhaber F., Huynen M., Orengo Ch., Sunyaev Sh., Yuan Ya., Bork P.	Structural and functional annotation of genomic sequences: assignment of fold family and sorting of proteins with respect to subcellular localization
Eneev T.M., Kozlov N.N., Kugushev E.I.	Computer research of some transcription process parameters influence on RNA secondary structure folding
Fedorov B.B., Esipova N.G.	Distribution of dipole moments in tertiary structures of globular proteins
Finkelstein A.V., Badretdinov A.Ya.	How homologs can help to predict 3D protein structures even when they cannot be predicted for individual sequences
Frickenhaus S., Heinrich R.	Kinetic and thermodynamic aspects of lipid translocation in biological membranes
Frolov A.S., Lavryushev S.V., Grigorovich D.A., Kel A.E., Ptitsyn A.A., Kolchanov N.A., Podkolodny N.L., Solovyev V.V., Milanesi L., Bourne P., Wingender E., Overton G.C.	WWWMGS: an integrative WWW-server for molecular genetic studies
Galitsky B, Gelfand I., Kister A.	Prediction of germline set of sequences for the immunoglobulin family
Garab G.	Structure, function, spectroscopy and structural dynamics of lamellar aggregates of chlorophyll a/b light harvesting complexes. A model of highly organized molecular macroassemblies of biological origin
Glazko G.V., Rogozin I.B., Glazkov M.V.	Comparative study of the chromosomal DNA fragments from nuclear lamina, cores of rosette-like structures (elementary chromomers), MARs/SARs and synaptonemal complexes based on simple nucleotide motifs
Goryacheva E.A., Gorokhov V.V., Korvatovsky B.N., Knox P.P., Paschenko V.Z., Tusov V.B.	Mechanisms of dynamic interactions of the cofactors with water-protein surrounding in the RC from bacterium Rb.sphaeroides on picosecond time-scale
Grosberg A.	Correlations in protein sequences: a fingerprint of evolution?
Haberichter Th., Höfer Th., Heinrich R.	Communication of calcium oscillators in networks of glial cells
Hatzigeorgiou A., Sanida P., Papakostas E., Reczko M.	Finding sequencing errors on DNA coding regions: a combination of statistical and neural network methods
Haussler D.	Models and methods in biosequence analysis
Heinrich R., Stephani A.	Optimal structural design and control of ATP producing metabolic networks
Ignatieva E.V., Ananko E.A., Kel O.V., Podkolodnaya O.A., Merkulova T.I., Stepanenko I.L., Busygina T.V., Kozlova O.N., Kolpakov F.A., Lavryushev S.V., Grigorovich D.A., Podkolodny N.L., Frolov A.S., Kel A.E., Kolchanov N.A.	LM-TRRD: the first step toward understanding complex genetic network of lipid metabolism
Kel O.V., Kel A.E., Romashchenko A.G., Wingender E., Kolchanov N.A.	COMPEL, composite regulatory element database, as a tool for promoter identification
Kirillova O.V., Samsonova M.G., Serov V.N.	Network applet for evaluation of dynamics of user-defined genetic network
Kirvelis D.	Biophysics as theoretical biology
Kochetov A.V., Vorobiev D.G., Babenko V.N., Kisselev L.L., Kolchanov N.A.	Translational control of gene expression in eukaryotes: mRNA encoding abundant and scarse proteins are dissimilar in many structural features
Kolchanov N.A., Ponomarenko M.P., Kel A.E., Kondrakhin Y.V., Frolov A.S., Kolpakov F.A., Goryachkovskaya T.N., Kel O.V., Ananko E.A., Ignatieva E.V., Podkolodnaya O.A., Stepanenko I.L., Merkulova T.I., Babenko V.V., Vorobyiev D.V., Lavryushev S.V., Ponomarenko J.V., Kochetov A.V., Kolesov G.N., Podkolodny N.L., Milanesi L., Wingender E., Heinemeyer T., Solovyev V.V.	GeneExpress: a WWW-oriented integrator for the databases and computer systems for studying the eukaryotic gene expression
Kolpakov F.A.	Computer system MGL: a tool for sample generation, visualization, and analysis of regulatory genomic sequences
Kolpakov F.A.	Convergence in the evolution of promoters in higher eukaryotic genes transcribed by RNA -polymerase II
Kolpakov F.A., Kolchanov N.A.	Study of peculiarities of vertebrate promoter region evolution
Kozlov N.N.	Mathematical analysis of overlapping genes
Kriventseva E.V., Gelfand M.S.	Statistical analysis of the exon-intron structure and splicing sites of several eukaryotes
Kugushev E.I., Pirogova E.E., Starostin E.L.	Elastic rod model of 3D structure of RNA
Kutuzova G.I., Frank G.K., Esipova N.G.	RNA polymerase senses periodicities in the promoter structure
Lazareva B., Haussler D.	Consensus sampler for multiple DNA alignment
Lebedeva G.V., Belyaeva N.E., Riznichenko G.Yu., DeminO.V.	Modelling of the primary events of photosynthsis and the fast phase of fluorescence induction
Likhoshvay V.A., Matushkin Yu.G.	Theoretical analysis of possible evolutionary trends in the distribution of codons along mRNA
Linde D.M.	Physicochemical basis of pairwise interactions between amino acid residues in Brookhaven data bank
Lobanov A.I., Starozhilova T.K., Guria G.T.	Characteristic features of self-sustained oscillation processes in active recovery medium
Logofet D. O.	New generation of Markov-chain models for vegetation dynamics: a move from phenology towards causation
Maróti P., Gerencsér L.	Electron and proton transfer in bacterial reaction centers
Matorin D.N., Antal T.K., Levenko B.A., Kazimirko Yu.V.	A primary photosynthetic reaction of phytoplankton in ecomonitoring
Matushkin Yu.G., Morozov P.S., Morozova I.N.	Features of the evolution of cytochromes P450
Mironov A.A., Gelfand M.S.	Computer analysis of regulatory patterns in complete bacterial genomes. PurR binding sites
Morita K., Arisaka M.	Basic study of sterilization by high oxidation potential water for food and agricultural products
Müller S.C.	Spiral wave dynamics in biological systems
Oksengendler B.L., Strokovich K.E., Ruban I.N., Voropaeva N.L.	Enzyme degradation: mechanism of auger-destruction
Ozoline O.N., Deev A.A.	Structural features of bacterial promoters as revealed by sequence analysys
Peshkin L., Gelfand M.	Segmentation of chromosome size DNA sequences into compositionally homogeneous domains using hidden Markov models
Ponomarenko J.V., Furman D.P., Mischenko T.M., Katokhina L.V., Valuev V.V., Peregoedova E.L., Frolov A.S., Podkolodny N.L., Ponomarenko M.P., Kolchanov N.A.	A knowledge base for the functional DNA/RNA site activity
Ponomarenko M.P., Ponomarenko J.V., Podkolodnaya O.A., Frolov A.S., Vorobyev D.V., Kolchanov N.A., Overton G.C.	Mean-recognition can increase the genome annotation accuracy
Ponomarenko M.P., Titov I.I., Ponomarenko J.V., Kolchanov N.A., Mazin A.V., Kowalczykowski S.C.	The contextual specificity of the affinity between ssDNA and RecA-filament correlates with genetic code characteristics
Rabinovich A.L., Ripatti P.O., Balabaev N.K.	Molecular dynamics simulations of model isolated polyenoic diacylglycerolipids. Atom-atom distances distribution functions
Rabinovich A.L., Ripatti P.O., Balabaev N.K.	Computer investigation of C-H bond ordering of unsaturated lipids in monolayers: molecular dynamics simulations
Ramensky V.E., Makeev V.Ju., Tumanyan V.G.	Bayessian approach to DNA segmentation
Ramensky V.E., Sunyaev S.R., Tumanyan V.G.	In what extent do point mutations affect a protein structure?
Ratner V.A.	The genetical language as linguistic system
Redlin H., Voigt J., Hillmann F.	Ultrafast dynamics of excitations in light harvesting pigment-protein complexes of photosynthesis
Renger G.	Studies on the reaction pathway from light absorption to water cleavage in photosynthesis
Riznichenko G., Rubin A.	Levels of biological regulation on the example of photosynthetic organisms
Rogozin I.B., Glazko G.V., Milanesi L.	The subclass approach for mutational spectra analysis: application of the SEM algorithm
Roytberg M.A.	On the number of optimality regions in parametric sequence alignment
Roytberg M.A.	Pareto-optimal alignments of symbol sequences
Roytberg M.A., Semionenkov M.N.	SimSim - the interpretator for biosequence analyses
Roytberg M.A., Semionenkov M.N., Tabolina O.Yu	How to find gaps without gap penalty?
Rykunov D.S. Lobanov M.Yu, Reva B.A., Finkelstein A.V.	How homologs help to predict protein folds
Samsonova M.G., Savostyanova K.G., Serov V.N., Spirov A.V., Surkova S.Yu.	GeNet, the database of genetic networks
Shepelev V.A.	Identification of functional signals in a set of sequences
Shepelev V.A.	On the distribution of dinucleotides in nucleic acid sequences
Sinoquet Ch.	Recognition of complex patterns specified with variables and morphic transformations. A method and an analysing tool allowing insertions and deletions
Smirnova O.A.	Mathematical modeling of mortality dynamics of mammalian populations exposed to low level irradiation
Sorokin A.	A simple automatic tool for draft annotation of bacterial genome sequence
Tiktopulo E. I., Loseva O. I., Dobritsa A. P., Potekhin S. A.	Heat denaturation of CryIIIa -endotoxin Bacillus thuringiensis subsp. tenebrionis
Titov I.I., Ivanisenko V.A., Kolchanov N.A.	Prediction of RNA secondary structure using genetic algorithm with steepest descent
Vitreschak A., Bansal A. K., Gelfand M.S.	Conserved RNA structures regulation initiation of tranlsation of Escerichia coli and haemophilus influenzae ribosomal protein operons
Volgin S. L., Matorin D. N., Vavilin D. V.	A study of the action spectrum of PS II photoinhibition in isolated barley thylakoids

Abstracts in English Abstracts in Russian Program Photos